Alignment of alleles: Charr (Salvelinus alpinus) IGHV2S2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6  6A  6B   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   Q   S   L   E   S   S   P   S   S   S       V   L   K   K   L   G   E   T   I   S
  AJ000363,IGHV2S2*01           GGA CAG AGT CTG GAG TCC AGT CCC TCC AGT TCA ... GTC CTG AAA AAG CTT GGA GAA ACT ATA AGT

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   S   C   K   I   S   G   F   T   F   G   S   H   N                   T   H
  AJ000363,IGHV2S2*01           CTC TCC TGT AAG ATA TCT GGA TTC ACC TTT GGC AGC CAC AAC ... ... ... ... ACA CAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   P   A   G   K   S   L   E   W   M   G   Y   S   G   L   G   L
  AJ000363,IGHV2S2*01           TGG ATA CGA CAG CCA GCT GGA AAG TCC CTG GAA TGG ATG GGT TAC TCT GGA TTA GGC CTA

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 G                   Y   H   A   K   R   F   E       G   R   M   E   T   T   K
  AJ000363,IGHV2S2*01           GGT ... ... ... ... TAC CAT GCT AAA AGG TTT GAA ... GGA CGC ATG GAA ACA ACT AAA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 A   N   S   N   S   M   M   T   L   K   L   S   G   L   K   A   E   D   S   A
  AJ000363,IGHV2S2*01           GCT AAT TCC AAC AGC ATG ATG ACT CTG AAG CTG TCT GGT CTC AAA GCA GAG GAC TCT GCT

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AJ000363,IGHV2S2*01           GTG TAT TAC TGT GCA CGA  #c
#c: rearranged cDNA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/07/2003
Author: Nathalie Bosc